2022 n2c2 Shared Task and Workshop
Challenges in Natural Language Processing for Clinical Data
November 4, 2022
AMIA-affiliated workshop, Washington Hilton, Washington, D.C.
We are pleased to announce the 2022 n2c2 Workshop on Challenges in Natural Language Processing for Clinical Data. This is the latest in a series that began in 2006 at the former i2b2 National Center for Biomedical Computing (NCBC) and now continues at the Harvard Medical School Department of Biomedical Informatics (DBMI) in partnership with the College of Engineering and Computing of George Mason University. This year, National NLP Clinical Challenges (n2c2, formerly known as i2b2 NLP Shared Tasks) workshop will bring you three tasks:
- Track 1: Contextualized Medication Event Extraction
- Track 2: Extracting Social Determinants of Health (SDOH)
- Track 3: Progress Note Understanding: Assessment and Plan Reasoning
The workshop is open to all interested parties and will highlight the contributions of the systems that were developed for the three tasks. We look forward to seeing you all at the Washington Hilton on November 4, 2022.
Agenda
8:30 AM – 9:20 AM: Opening remarks
9:20 AM – 9:35 AM: Break
9:35 AM – 10:35 AM: Presentations: Track 1
Span-based and Question Answering-based Medication Event Extraction
Koshi Yamada, Ryuki Ida, Tomoki Tsujimura, Kohei Makino, Makoto Miwa, and Yutaka Sasaki
KEEPHA at n2c2 2022: Track 1
Lisa Raithel, Faith W. Mutinda, Gabriel H. B. Andrade, Hui- Syuan Yeh, Tomohiro Nishiyama, Mathieu Laï-King, Shuntaro Yada, Roland Roller, Cyril Grouin, Agata Savary, Aurélie Névéol, Thomas Lavergne, Eiji Aramaki, Sebastian Möller, Yuji Matsumoto, and Pierre Zweigenbaum
Contextualized Event Extraction with Packed-Levitated Markers and Multi-Dataset Learning
Jake Vasilakes, Panagiotis Georgiadis, Nhung Nguyen, Makoto Miwa, and Sophia Ananiadou
10:45 AM – 12:05 AM: Presentations: Track 2
Microsoft-Nuance at n2c2 2022 Track 2: Social Determinants of Health
Asma Ben Abacha, Yadan Fan, and Brian Romanowski
Using dual transformers for multi-task, multi-label token classification (MTML-BERT) to extract social determinants of health from clinical notes
Russell Richie, Victor Ruiz, Sifei Han, Helen Shi, and Fuchiang Rich Tsui
KPSCMI Systems for 2022 n2c2 Track 2 Subtask A and B
Manabu Torii, Ian M. Finn, Son Doan, Elly W. Yang, and Daniel S. Zisook
A Comprehensive Pipeline for Extracting Social Determinants of Health from EHRs
Xingmeng Zhao and Anthony Rios
~~~~~~ 12:05 PM - 1:30 PM: Lunch & poster set-up ~~~~~~
1:30 PM – 2:30 PM: Presentations: Track 3
Assessment and Plan Reasoning in Progress Notes with Transfer Learning and Bayesian Inference.
Juyong Kim, Cheng Cheng, Shahriar Noroozizadeh, Pradeep Ravikumar, Jeremey C. Weiss.
Technical Abstract for N2C2 2022 Task 3 - Progress Note Understanding: Assessment and Plan Reasoning.
Vimig Socrates, Aidan Gilson, Kevin Lopz, Ling Chi, Richard Andrew Taylor, David Chartash.
Predicting the Relation Between Assessment and Plan in Clinical Notes Using Transformer-based Models. Jifan Gao, Shilu He, Junjie Hu, Guanhua Chen.
2:30 PM – 2:45 PM: Lightning talks for posters
2:45 PM - 4PM: Poster session (concurrent coffee break)
Posters Track 1:
UF_HOBI: A Report for The University of Florida Team in the 2022 N2C2 Challenge – Track 1 Contextualized Medication Event Extraction
Aokun Chen, Jiang Bian, Willliam Hogan, Yonghui Wu
Machine Reading Comprehension-based Medication Extraction from Clinical Notes: University of Michigan @ i2b2 2022 Task 1
Peijin Han, Joseph Menke, Juran Shao, and V.G.Vinod Vydiswaran
Detection of Medication Mentions and Medication Change Events in Clinical Notes Using Transformer-Based Models
Yuting Guo, Yao Ge, Yuan-Chi Yang, and Abeed Sarker
Ixa NLP Group at n2c2 2022 Track 1 Medical Extraction (NER) Subtask
Jordan C. Koontz, Maite Oronoz, PhD, Alicia Pérez
Posters Track 2:
A Report for The University of Florida Team in the 2022 N2C2 Challenge – Track 2 Progress Note Understanding
Zehao Yu, Aokun Chen, Xi Yang, Jiang Bian, Willliam Hogan, and Yonghui Wu
Cross-institution extraction of social determinants of health from clinical notes: an evaluation of methods
Madhumita Sushi, Atul J. Butte, Ewoud Schuit, and Artuur M. Leeuwenberg
Extracting Social Determinants of Health from Clinical Text with a Post-Hoc Ensemble of Off-the-shelf Models
Paul M. Heider, Kexin Chen, and Jihad S. Obeid
Extraction of Social Determinants of Health using Hierarchical CRF-Modeling – University of Michigan @ n2c2 2022 Track 2
Safa Jabri, Dharani Krishnan Senthil Kumar, and V.G. Vinod Vydiswaran
Hybrid Models to Extract Social Determinants of Health from Medical Records
Jianlin Shi, Qiwei Gan, Kelly S. Peterson, Hannah Eyre, Annie Bowles, Patrick R. Alba, Scott L. DuVall, and Olga V. Patterson
Utilizing Contextualized Biomedical Embeddings for Extracting Social Determinants of Health
Diwakar Mahajan, Jennifer J. Liang, and Ching-Huei Tsou
Posters Track 3:
UMass A&P: An Assessment and Plan Reasoning System of UMass in the 2022 N2C2 Challenge.
Sunjae Kwon, Zhichao Yang, Hong Yu.
A Report for The University of Florida Team in the 2022 N2C2 Challenge – Track 3 Progress Note Understanding.
Aokun Chen, Zehao Yu, Xi Yang, Jiang Bian, William Hogan, Yonghui Wu.
4:00 PM - 5:00 PM: Closing Panel, Open Discussion, Closing Remarks